Science as Falsification

 Posted by at 8:46 am on August 29, 2010
Aug 292010
 

With the academic semester beginning, I was sent several papers, which I am supposed to send to students in my introductory biology labs. These papers deal with the scientific method, strong inference testing, and how to distinguish among theories that range from scientific and non-scientific. The latter topic, I feel, is of tremendous importance to the both the scientist and nonscientist. I have had countless arguments with people who are convinced that our disagreement between their superstitious belief and my loyalty to empirically tested theories are simply a matter of having different opinions – that, each could be right and that both of our perspectives hold equal value.

Many people interpret the loyalty people have towards science as the same faith-based or superstition-based beliefs that people have towards religion, astrology or as non-clinically untested home remedies. For the longest time, people believed that the earth was flat. They were wrong, regardless of how much they believed. The tribesman who scratched his nose before a rainstorm and thereafter created an elaborate rain-dance did no more to the weather than his comrade who did nothing. It wouldn’t be easy to convince the rain dancer of this fact. People are very set in their superstitious ways. We can think we are right until we are blue in the face, but believing in something has little to do with its validity.

Within scientific fields, the same problems occur. All science is not conducted the same way and the strength of theories from various fields DO NOT carry equal weight. The following link will bring you to an eloquently written article written by Karl R. Popper titled “Science as Falsification” that deals with these issues:
Enjoy!

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Catching up!

 Posted by at 10:28 am on August 27, 2010
Aug 272010
 

My blogging pace has slackened recently, but I promise it’s not because I’m not doing stuff. On the contrary, I’m doing so much stuff that I haven’t had time to post anything here. So here are a couple of quick updates: in the last couple of weeks, I’ve been working on processing and analyzing the data from my fieldwork in Miami. In this case, “data processing” means listening to many hours of my own recorded voice saying things like “dewlap……pushup…….dewlap…….” – I’m transcribing the dictated behavioral records that I took while observing territorial male anoles responding to tethered intruder males. The analyses of this experiment and my other data are still underway, but some of results look like they might be interesting. I’ll post more when I know more!

A strawberry poison dart frog (Dendrobates pumilio) photographed at La Selva Biological Station, Costa Rica.

In a few weeks I’ll be off to Virginia to visit family and friends, then I’ll fly from DC to Perth, Western Australia (3 planes and way too many hours). Perth is hosting the this year, and I’ll be presenting some of my work on strawberry poison dart frogs (Dendrobates pumilio), which I conducted with Nate Dappen and . Nate will also be at the conference, presenting some of his work on the Ibiza Wall Lizard (Podarcis pityusensis).

Last week I posted a link to a short video I made after witnessing an amazing mass emergence of termites in a Miami city park. The video features the inimitable music of my friend Dan Warren. In addition to being a musician, Dan is also a heck of an evolutionary biologist. He’s currently a postdoc at the University of Texas in Austin, and you can read about his adventures in the field with fish, sperm, and other interesting swimming things at his blog, Science As A Verb (highly recommended!).

Finally, I got a new camera this week: the Canon EOS 7D. I decided a few weeks ago that I had too many cameras, and they weren’t really fitting my evolving needs (video capture, compact size, etc.). So I sold my Canon 40D and 1D Mark IIn, and I’m replacing them with the 7D. The 7D has a good AF system and high frame rate for action shooting, and can also shoot HD video, like my Canon 5D Mark II. I’m going to run the new camera through its paces this weekend, and I’ll try to post some samples next week!

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"Covered in Termites": video by Neil Losin

 Posted by at 5:31 am on August 18, 2010
Aug 182010
 

My friend and colleague Neil Losin just posted a video he created of an amazing event: a massive termite emersion in a park in South Florida. To check out his post, click here: https://daysedgeproductions.com/neil.blog/?p=368

or to simply watch the video, see below. Enjoy!

from on .

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Covered in termites!

 Posted by at 10:42 am on August 17, 2010
Aug 172010
 

If the idea of a couple hundred thousand termites pouring out of a rotting stump distresses you, then read no further.

In May, I was scouting field sites in Miami, trying to find some good places for one of my anole experiments. In one park (A. D. Barnes Park), I encountered something completely unexpected: a mass emergence of termites. In a termite nest, most individuals are workers or soldiers, sexually immature individuals of both sexes that perform the everyday non-reproductive tasks for the colony. Every so often, however, a colony can produce huge numbers of winged, reproductive individuals of both sexes, called “alates.” These alates disperse from the parent colony, find mates, then quickly shed their wings and head underground to start colonies of their own.

Often, the alates emerge from the nest en masse, and the air can become filled with thousands of termites. This was exactly the situation I found in A. D. Barnes Park. A standing stump and several nearby fallen logs were completely covered in white-winged termite alates. The alates seethed and streamed off of the logs in staggering numbers; I didn’t make a careful estimate, but I wouldn’t be surprised if the total number of alates emerging was in the hundreds of thousands.

It was an amazing sight. The only camera I had with me was my Panasonic LX-3 point-and-shoot. Nevertheless, I captured some short video clips to document the spectacle. When I leaned in to the nest to capture some closeup footage, I came out covered in alates from head to toe!

Later, when I was looking over the video I’d shot, I remembered a song written by my friend Dan Warren that would accompany the footage perfectly. Fast-forward a few months, and I finally had the time to edit the footage together into this short piece, which I hope you enjoy.

from on .

I hope I witness a spectacle like this one again some day, ideally when I have a better video camera and a tripod handy!

To hear more of Dan’s music (and to read about his research), check out his website.

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BABY KILLERS

 Posted by at 6:26 pm on August 9, 2010
Aug 092010
 

On June 3rd I posted some information about lizard cannibalism on Mediterranean islands. I mentioned that I had seen a few adult male lizards eating juvenile lizards, but unfortunately didn’t have my camera out to capture it. Luckily, I got a second chance.

A few days ago I swam out to a small island called Torretta to sample the lizard population.  Torreta is an island of the north west coast of Espalmador and is home to a putative subspecies of the Ibiza Wall Lizard Podarcis pityusensis torretensis (Surprisingly, the lizards on Torretta, which is less than 100m from Espalmador, are morphologically quite different from the subspecies found on Espalmador). I have been making an effort to carry my camera with me at all times in the field, in the case that something special occurs. Something exciting did happened. I spotted an adult male with a juvenile in its mouth. Enjoy!

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Are you breaking up with me? (When species split)

 Posted by at 8:56 am on August 9, 2010
Aug 092010
 

The American Ornithologists Union just released a new Supplement to the Check-list of North American Birds, an event that has birders scurrying to update their lists as species, genera, and sometimes higher taxa are split, combined, and reorganized based on the latest scientific data. But what kind of data convinces the authorities at the AOU that the checklist needs changing?

Winter Wren (formerly Troglodytes troglodytes). Painting by David Allen Sibley.

One of the most interesting changes in the 51st Supplement is the splitting of the species formerly known as Winter Wren (Troglodytes troglodytes). The case for the split was made in a recent in the journal Molecular Ecology by David Toews and Darren Irwin of the University of British Columbia. The Winter Wren is a widespread species, found in temperate forests throughout North America and Eurasia. At last count, avian taxonomists had classified 44 geographic subspecies of the Winter Wren, each a subtle variant in plumage or morphology.

But some variation is more striking: for example, there are major differences in song between the Pacific (T. t. pacificus) and eastern (T. t. hyemalis) subspecies. Toews and Irwin wanted to know if this song variation could cause reproductive isolation between these subspecies – if their songs were sufficiently different, the two subspecies might not interbreed if they came into contact. Species are often defined according to the Biological Species Concept, which follows Ernst Mayr’s definition of species: “groups of actually or potentially interbreeding natural populations, which are reproductively isolated from other such groups.” So if Toews and Irwin were right and the eastern and Pacific Winter Wrens really didn’t interbreed where their ranges overlapped, then they wouldn’t just be subspecies – they would be two different species.

The first step was to find a site where both subspecies occurred; no such locations were known before their study, but Toews and Irwin eventually found such a place in northeastern British Columbia. Then, they captured adult wrens, took blood samples for DNA analysis, and recorded males singing.

Even though males singing hyemalis-type song and pacificus-type song were often found in adjacent territories, no male sang both singing types. Moreover, the two singing types could be easily and reliably distinguished using acoustic analysis. At the sympatric site – i.e. the site where both species occurred – the two singing types were just as distinctive as were songs recorded in geographically distant populations of the eastern and Pacific-type wrens.

Geographic ranges of the newly defined Winter Wren (Troglodytes hyemalis) and Pacific Wren (T. pacificus). Map by Darren Irwin.

Next, Toews and Irwin analyzed the mitochondrial DNA of the wrens they captured, and found that the DNA sequences were quite different between the two “subspecies,” but nearly invariant within them. After calibrating the observed genetic divergence with a molecular clock – a rate of DNA sequence evolution calculated from known divergence times between species – they suggest that the two “Winter Wrens” may have diverged from one another up to 4.3 million years ago, before the Pleistocene glaciation events that are thought to have driven the diversification of many North American bird groups.

What does all of this mean? For the wrens, not much! They’ll go on doing what they’ve been doing for millions of years, regardless of what we call them. But the AOU has considered the evidence that Toews and Irwin collected and taken action: the Winter Wren (Troglodytes troglodytes) is now split into the Winter Wren (T. hyemalis) in eastern North America and the Pacific Wren (T. pacificus) in western North America. Since I’ve seen The Bird Formerly Known as Winter Wren on both sides of the continent, I suddenly have another species on my life list!

Based on other evidence, the AOU also split both North American species from the newly-named Eurasian Wren, which (because it was the first form described by scientists) keeps the original Latin name Troglodytes troglodytes. The fact that we are only just recognizing species boundaries in such a well-studied bird means that there are surely other “cryptic species” out there, just waiting to be discovered!

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ESA Workshop – A success!

 Posted by at 12:28 pm on August 5, 2010
Aug 052010
 

I spent Saturday through Tuesday at the 95th Annual Ecological Society of America (ESA) meeting in Pittsburgh, PA. On Sunday, along with co-organizers Molly Mehling and , I co-instructed a full-day workshop on photography for ecologists: “Visual Communication of Ecological Knowledge: Photography as a Tool of Style and Substance.” Our goals were (1) to help ecologists take better photos; and (2) to help our participants gain the skills they need to use digital photography as a tool in their research and public outreach.

Workshop participant Ian Pulsford (Dept. of Environment, Climate Change, and Water, New South Wales, Australia) experiments with a macro lens.

The workshop was a lot of fun. We had a great group of 16 participants, ranging from undergraduates to full professors and representing a wide range of photographic skill levels. We spent most of the day in the field at Panther Hollow Lake, a site in Schenley Park that the Pittsburgh Parks Conservancy is considering for ecological restoration. Our participants got to explore the site with their cameras and work on whatever skills they wanted to practice, learn new techniques (from the organizers and from each other), and work through a set of field exercises that we provided them.

In the afternoon, Dror Yaron and other members of the Carnegie Mellon CREATE lab helped our participants use the Gigapan, a camera robot that allows users to capture huge panoramic images by stitching many individual images together. The resulting images (some of which may be measured in gigapixels, not megapixels!) can be uploaded to a very slick online viewing interface, where they can be explored and annotated by the public. If you haven’t seen the Gigapan site before, you should definitely check it out for yourselves – it’s a really cool resource.

Dror Yaron (Carnegie Mellon CREATE Lab) encourages workshop participants to use the Gigapan to capture a wide view of Panther Hollow.

Before the day was over, we discussed possible avenues for using digital images in ecological research and outreach: everything from blogs like this one to print and web articles, gallery exhibits, and multimedia. I think everyone (including me and my fellow organizers) gained a lot from the workshop. I’m already looking forward to running more workshops like this one – it feels great to empower scientists to think more artistically and to use visual media to communicate with each other and with non-scientists.

Once we have gathered some of the participants’ images from Sunday’s workshop, I’ll be sure to post a link to an online gallery so you can see them for yourselves!

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BABY IBIZA WALL LIZARDS

 Posted by at 6:58 pm on August 3, 2010
Aug 032010
 

In late May, I collected some lizard eggs for an experiments. I carefully collected seven eggs from the terrariums where pregnant females were housed, half buried them in moist vermiculate and diligently waited from them to hatch. In total, I collected eggs from four females. Three females laid single eggs, but one female managed to lay three.

Over the last eight weeks, two eggs from single-egg clutches shriveled up and died, and one egg hatched without me there (done worry, I still have the little lizard). I have been wanting to photograph and film lizards emerging from their eggs for some time now, and this was my chance.

Ever since the first egg hatched, I have been obsessively monitoring my eggs for signs of movement. Yesterday afternoon, I noticed a tiny rip in one of the eggs from the three-egg clutch. Excited, I prepared my photo/video gear, set up a small sandy stage with lighting and began to wait.

As it turns out, lizards take their sweet time to come out of their eggs. I stared at that egg for no less than six hours, waiting for the little guy to come into the world. On several occasions, he popped his head out, look around, decided that he like the egg-life more, and disappeared back inside his shell.

Needless to say, I have a lot of boring footage. But, it wasn’t all in vain. I had always assumed that these eggs would develop at slightly different rates and that eggs within the same clutch would hatch at different times.  So it came as a surprise when, over the course of six hours, all three eggs began to bend, expand, and eventually break.

Keep an eye out for a short film of this amazing event. I’ll try to post it in the next few weeks. For now, you’ll have to settle for a couple of photos (which unfortunately do not do justice to what actually occurred).

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